Good question
Thinking about a metal "spoon" lure e.g. Toby with a treble way down the back end - seems to work rather well.
Even with hard body lures with two hooks, one in the middle and one at the end you mostly see the back hooks in a fishes mouth and the middle hook either free or attached somewhere on the body - often lodged there well after the tail hook was eaten.
So there is a lot to be said for long shank hooks on short flies. BUT the problem with that basic design is tail-wrap So a short shank hook tends to be more popular even on long streamer patterns regardless.
Most flies are smaller than most lures, so fish will often try to engulf the whole fly and get hooked regardless of where the business end of the hook is.
But there are those days when short-taking tail nipping fish will drive you nuts I keep some keel-fly designs on long shank hooks in my flybox for such occasions. A little bit of clear silicone glue massaged into the fibres just beyond the hook bend help to combat tail-wrap a little - but it can still be a PITA.
Squid-flies lend themselves to long shank hooks, or extended, or even articulated hook setups. Very big long flies need two hooks in tandem to give sting to the full length of the fly.
Some fish do normally hit the head of their prey but other buggers like shad have made a living out of amputating tails first - for them a longer shank hook with the point a bit closer to the rear not only works better but also offers some tippet protection.
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